J5_7Q0F_006
3D structure
- PDB id
- 7Q0F (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of Candida albicans 80S ribosome in complex with phyllanthoside
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.64 Å
Loop
- Sequence
- UUGA*UUUG*CA*UG*CAGAAAA
- Length
- 19 nucleotides
- Bulged bases
- 7Q0F|1|1|G|2396, 7Q0F|1|1|A|2771, 7Q0F|1|1|G|2772, 7Q0F|1|1|A|2773, 7Q0F|1|1|A|2774
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_7Q0F_006 not in the Motif Atlas
- Homologous match to J5_8P9A_015
- Geometric discrepancy: 0.2471
- The information below is about J5_8P9A_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_96125.2
- Basepair signature
- cWW-cWH-cWH-tSS-cWW-cWW-cWW-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
7Q0F|1|1|U|2394
7Q0F|1|1|U|2395
7Q0F|1|1|G|2396
7Q0F|1|1|A|2397
*
7Q0F|1|1|U|2583
7Q0F|1|1|U|2584
7Q0F|1|1|U|2585
7Q0F|1|1|G|2586
*
7Q0F|1|1|C|2599
7Q0F|1|1|A|2600
*
7Q0F|1|1|U|2622
7Q0F|1|1|G|2623
*
7Q0F|1|1|C|2770
7Q0F|1|1|A|2771
7Q0F|1|1|G|2772
7Q0F|1|1|A|2773
7Q0F|1|1|A|2774
7Q0F|1|1|A|2775
7Q0F|1|1|A|2776
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain 2
- Ribosomal 60S subunit protein L21A
- Chain AB
- Ribosomal 60S subunit protein L28
- Chain AC
- 60S ribosomal protein L29
- Chain AP
- Ribosomal 60S subunit protein L42A
- Chain j
- Ribosomal 60S subunit protein L2A
- Chain v
- Ribosomal protein L15
- Chain y
- Ribosomal 60S subunit protein L18A
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