J5_7Q0R_003
3D structure
- PDB id
- 7Q0R (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Candida albicans 80S ribosome in complex with blasticidin s
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.67 Å
Loop
- Sequence
- CGAG*CGUAA*UGAACGAAG*CGA*UAAGAG
- Length
- 27 nucleotides
- Bulged bases
- 7Q0R|1|1|A|717, 7Q0R|1|1|A|780, 7Q0R|1|1|G|781
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_7Q0R_003 not in the Motif Atlas
- Homologous match to J5_8C3A_003
- Geometric discrepancy: 0.0548
- The information below is about J5_8C3A_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7Q0R|1|1|C|673
7Q0R|1|1|G|674
7Q0R|1|1|A|675
7Q0R|1|1|G|676
*
7Q0R|1|1|C|700
7Q0R|1|1|G|701
7Q0R|1|1|U|702
7Q0R|1|1|A|703
7Q0R|1|1|A|704
*
7Q0R|1|1|U|711
7Q0R|1|1|G|712
7Q0R|1|1|A|713
7Q0R|1|1|A|714
7Q0R|1|1|C|715
7Q0R|1|1|G|716
7Q0R|1|1|A|717
7Q0R|1|1|A|718
7Q0R|1|1|G|719
*
7Q0R|1|1|C|745
7Q0R|1|1|G|746
7Q0R|1|1|A|747
*
7Q0R|1|1|U|778
7Q0R|1|1|A|779
7Q0R|1|1|A|780
7Q0R|1|1|G|781
7Q0R|1|1|A|782
7Q0R|1|1|G|783
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain AB
- Ribosomal 60S subunit protein L28
- Chain AC
- 60S ribosomal protein L29
- Chain AJ
- 60S ribosomal protein L36
- Chain l
- Ribosomal 60S subunit protein L4B
- Chain t
- 60S ribosomal protein L13
- Chain y
- Ribosomal 60S subunit protein L18A
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