J5_7Q4K_003

3D structure

PDB id

7Q4K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Erythromycin-stalled Escherichia coli 70S ribosome with streptococcal MsrDL nascent chain

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

7Q4K|1|BA|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_7Q4K_003 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.0641

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

7Q4K|1|BA|C|47
7Q4K|1|BA|G|48
7Q4K|1|BA|A|49
7Q4K|1|BA|U|50
7Q4K|1|BA|G|51
7Q4K|1|BA|A|52
7Q4K|1|BA|A|53
7Q4K|1|BA|G|54
*
7Q4K|1|BA|C|116
7Q4K|1|BA|G|117
7Q4K|1|BA|A|118
7Q4K|1|BA|A|119
7Q4K|1|BA|U|120
7Q4K|1|BA|G|121
*
7Q4K|1|BA|C|130
7Q4K|1|BA|A|131
*
7Q4K|1|BA|U|148
7Q4K|1|BA|A|149
7Q4K|1|BA|U|150
*
7Q4K|1|BA|A|176
7Q4K|1|BA|G|177
7Q4K|1|BA|G|178

Current chains

Chain BA

23S rRNA

Nearby chains

Chain B2

50S ribosomal protein L34