J5_7Q4K_007
3D structure
- PDB id
- 7Q4K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Erythromycin-stalled Escherichia coli 70S ribosome with streptococcal MsrDL nascent chain
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- GAAAGACC*GGA(H2U)AACA*UCG(2MA)(PSU)GU*GUUUAG*CGGUCC
- Length
- 35 nucleotides
- Bulged bases
- 7Q4K|1|BA|A|2062, 7Q4K|1|BA|A|2448, 7Q4K|1|BA|H2U|2449, 7Q4K|1|BA|U|2584, 7Q4K|1|BA|U|2585, 7Q4K|1|BA|U|2609
- QA status
- Modified nucleotides: H2U, 2MA, PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7Q4K|1|BA|G|2057
7Q4K|1|BA|A|2058
7Q4K|1|BA|A|2059
7Q4K|1|BA|A|2060
7Q4K|1|BA|G|2061
7Q4K|1|BA|A|2062
7Q4K|1|BA|C|2063
7Q4K|1|BA|C|2064
*
7Q4K|1|BA|G|2446
7Q4K|1|BA|G|2447
7Q4K|1|BA|A|2448
7Q4K|1|BA|H2U|2449
7Q4K|1|BA|A|2450
7Q4K|1|BA|A|2451
7Q4K|1|BA|C|2452
7Q4K|1|BA|A|2453
*
7Q4K|1|BA|U|2500
7Q4K|1|BA|C|2501
7Q4K|1|BA|G|2502
7Q4K|1|BA|2MA|2503
7Q4K|1|BA|PSU|2504
7Q4K|1|BA|G|2505
7Q4K|1|BA|U|2506
*
7Q4K|1|BA|G|2583
7Q4K|1|BA|U|2584
7Q4K|1|BA|U|2585
7Q4K|1|BA|U|2586
7Q4K|1|BA|A|2587
7Q4K|1|BA|G|2588
*
7Q4K|1|BA|C|2606
7Q4K|1|BA|G|2607
7Q4K|1|BA|G|2608
7Q4K|1|BA|U|2609
7Q4K|1|BA|C|2610
7Q4K|1|BA|C|2611
Current chains
- Chain BA
- 23S rRNA
Nearby chains
- Chain B0
- 50S ribosomal protein L32
- Chain BC
- 50S ribosomal protein L2
- Chain BD
- 50S ribosomal protein L3
- Chain BE
- 50S ribosomal protein L4
- Chain BL
- 50S ribosomal protein L15
- Chain BS
- 50S ribosomal protein L22
- Chain D1
- MsrDL: FME-TYR-LEU-ILE-PHE-MET
- Chain D2
- Transfer RNA; tRNA
Coloring options: