J5_7QGN_002

3D structure

PDB id

7QGN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the SmrB-bound E. coli disome - stalled 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.37 Å

Loop

Sequence

CUGG*CGUG*CUUUCAG*CAGAAGAAG*CAAG

Length

28 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_7QGN_002 not in the Motif Atlas

Homologous match to J5_5J7L_002

Geometric discrepancy: 0.0587

The information below is about J5_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_67416.1

Basepair signature

cWW-F-F-F-cWW-tHW-F-tHW-tSS-cWW-cHW-cWW-F-cWW-F-cWW-F-F

Number of instances in this motif group

1

Unit IDs

7QGN|1|0|C|36
7QGN|1|0|U|37
7QGN|1|0|G|38
7QGN|1|0|G|39
*
7QGN|1|0|C|403
7QGN|1|0|G|404
7QGN|1|0|U|405
7QGN|1|0|G|406
*
7QGN|1|0|C|436
7QGN|1|0|U|437
7QGN|1|0|U|438
7QGN|1|0|U|439
7QGN|1|0|C|440
7QGN|1|0|A|441
7QGN|1|0|G|442
*
7QGN|1|0|C|492
7QGN|1|0|A|493
7QGN|1|0|G|494
7QGN|1|0|A|495
7QGN|1|0|A|496
7QGN|1|0|G|497
7QGN|1|0|A|498
7QGN|1|0|A|499
7QGN|1|0|G|500
*
7QGN|1|0|C|545
7QGN|1|0|A|546
7QGN|1|0|A|547
7QGN|1|0|G|548

Current chains

Chain 0

16S rRNA

Nearby chains

Chain 3

30S ribosomal protein S4

Chain E

30S ribosomal protein S12