3D structure

PDB id
7QQ3 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of the E.coli 50S ribosomal subunit in complex with the antibiotic Myxovalargin A.
Experimental method
ELECTRON MICROSCOPY
Resolution
2.1 Å

Loop

Sequence
GAAAGACC*GGAUAACA*UCG(2MA)(PSU)GU*GUUUAG*CGGUCC
Length
35 nucleotides
Bulged bases
7QQ3|1|I|A|2062, 7QQ3|1|I|A|2448, 7QQ3|1|I|U|2449, 7QQ3|1|I|U|2609
QA status
Modified nucleotides: 2MA, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

7QQ3|1|I|G|2057
7QQ3|1|I|A|2058
7QQ3|1|I|A|2059
7QQ3|1|I|A|2060
7QQ3|1|I|G|2061
7QQ3|1|I|A|2062
7QQ3|1|I|C|2063
7QQ3|1|I|C|2064
*
7QQ3|1|I|G|2446
7QQ3|1|I|G|2447
7QQ3|1|I|A|2448
7QQ3|1|I|U|2449
7QQ3|1|I|A|2450
7QQ3|1|I|A|2451
7QQ3|1|I|C|2452
7QQ3|1|I|A|2453
*
7QQ3|1|I|U|2500
7QQ3|1|I|C|2501
7QQ3|1|I|G|2502
7QQ3|1|I|2MA|2503
7QQ3|1|I|PSU|2504
7QQ3|1|I|G|2505
7QQ3|1|I|U|2506
*
7QQ3|1|I|G|2583
7QQ3|1|I|U|2584
7QQ3|1|I|U|2585
7QQ3|1|I|U|2586
7QQ3|1|I|A|2587
7QQ3|1|I|G|2588
*
7QQ3|1|I|C|2606
7QQ3|1|I|G|2607
7QQ3|1|I|G|2608
7QQ3|1|I|U|2609
7QQ3|1|I|C|2610
7QQ3|1|I|C|2611

Current chains

Chain I
23S ribosomal RNA

Nearby chains

Chain B
Myxovalargin A
Chain K
50S ribosomal protein L2
Chain L
50S ribosomal protein L3
Chain M
50S ribosomal protein L4
Chain T
50S ribosomal protein L15
Chain U
50S ribosomal protein L16
Chain a
50S ribosomal protein L22
Chain i
50S ribosomal protein L32

Coloring options:

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