J5_7QV1_001

3D structure

PDB id

7QV1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacillus subtilis collided disome (Leading 70S)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AAG

Length

22 nucleotides

Bulged bases

7QV1|1|V|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_7QV1_001 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.1245

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

7QV1|1|V|C|47
7QV1|1|V|G|48
7QV1|1|V|A|49
7QV1|1|V|U|50
7QV1|1|V|G|51
7QV1|1|V|A|52
7QV1|1|V|A|53
7QV1|1|V|G|54
*
7QV1|1|V|C|115
7QV1|1|V|G|116
7QV1|1|V|A|117
7QV1|1|V|A|118
7QV1|1|V|U|119
7QV1|1|V|G|120
*
7QV1|1|V|C|129
7QV1|1|V|A|130
*
7QV1|1|V|U|149
7QV1|1|V|A|150
7QV1|1|V|U|151
*
7QV1|1|V|A|178
7QV1|1|V|A|179
7QV1|1|V|G|180

Current chains

Chain V

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L34

Chain T

50S ribosomal protein L23