J5_7RQ9_015

3D structure

PDB id

7RQ9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2058-dimethylated Thermus thermophilus 70S ribosome in complex with iboxamycin, mRNA, deacylated A- and E-site tRNAs, and aminoacylated P-site tRNA at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GCAAGUUGG*UG*CC*GUGAACAGG*CGC

Length

25 nucleotides

Bulged bases

7RQ9|1|2A|G|1758, 7RQ9|1|2A|G|1763

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_7RQ9_015 not in the Motif Atlas

Homologous match to J5_9DFE_005

Geometric discrepancy: 0.0748

The information below is about J5_9DFE_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_99177.1

Basepair signature

cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

10

Unit IDs

7RQ9|1|2A|G|1674
7RQ9|1|2A|C|1675
7RQ9|1|2A|A|1676
7RQ9|1|2A|A|1677
7RQ9|1|2A|G|1678
7RQ9|1|2A|U|1679
7RQ9|1|2A|U|1680
7RQ9|1|2A|G|1681
7RQ9|1|2A|G|1682
*
7RQ9|1|2A|U|1706
7RQ9|1|2A|G|1707
*
7RQ9|1|2A|C|1751
7RQ9|1|2A|C|1752
*
7RQ9|1|2A|G|1756
7RQ9|1|2A|U|1757
7RQ9|1|2A|G|1758
7RQ9|1|2A|A|1759
7RQ9|1|2A|A|1760
7RQ9|1|2A|C|1761
7RQ9|1|2A|A|1762
7RQ9|1|2A|G|1763
7RQ9|1|2A|G|1764
*
7RQ9|1|2A|C|1988
7RQ9|1|2A|G|1989
7RQ9|1|2A|C|1990

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2E

50S ribosomal protein L3

Chain 2O

50S ribosomal protein L14

Chain 2T

50S ribosomal protein L19

Chain 2a

Small subunit ribosomal RNA; SSU rRNA