J5_7RQB_014

3D structure

PDB id

7RQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site aminoacyl-tRNA analog ACC-PMN, and P-site MAI-tripeptidyl-tRNA analog ACCA-IAM at 2.45A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.45 Å

Loop

Sequence

CGAG*CGUAG*CGAG*CGCAAG*CAAAG

Length

24 nucleotides

Bulged bases

7RQB|1|2A|A|652|||B

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7RQB|1|2A|C|601
7RQB|1|2A|G|602
7RQB|1|2A|A|603
7RQB|1|2A|G|604
*
7RQB|1|2A|C|624
7RQB|1|2A|G|625
7RQB|1|2A|U|626
7RQB|1|2A|A|627
7RQB|1|2A|G|628
*
7RQB|1|2A|C|635
7RQB|1|2A|G|636
7RQB|1|2A|A|637
7RQB|1|2A|G|638
*
7RQB|1|2A|C|650
7RQB|1|2A|G|651
7RQB|1|2A|C|652
7RQB|1|2A|A|652|||A
7RQB|1|2A|A|652|||B
7RQB|1|2A|G|652|||C
*
7RQB|1|2A|C|652|||V
7RQB|1|2A|A|653
7RQB|1|2A|A|654
7RQB|1|2A|A|655
7RQB|1|2A|G|656

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 28

50S ribosomal protein L35

Chain 2F

50S ribosomal protein L4

Chain 2P

50S ribosomal protein L15