J5_7RQC_015

3D structure

PDB id

7RQC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site aminoacyl-tRNA analog ACC-PMN, and P-site MFI-tripeptidyl-tRNA analog ACCA-IFM at 2.50A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

GCAAGUUGG*UG*CC*GUGAACAGG*CGC

Length

25 nucleotides

Bulged bases

7RQC|1|2A|G|1758, 7RQC|1|2A|G|1763

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_7RQC_015 not in the Motif Atlas

Homologous match to J5_9DFE_005

Geometric discrepancy: 0.0611

The information below is about J5_9DFE_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_99177.1

Basepair signature

cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

10

Unit IDs

7RQC|1|2A|G|1674
7RQC|1|2A|C|1675
7RQC|1|2A|A|1676
7RQC|1|2A|A|1677
7RQC|1|2A|G|1678
7RQC|1|2A|U|1679
7RQC|1|2A|U|1680
7RQC|1|2A|G|1681
7RQC|1|2A|G|1682
*
7RQC|1|2A|U|1706
7RQC|1|2A|G|1707
*
7RQC|1|2A|C|1751
7RQC|1|2A|C|1752
*
7RQC|1|2A|G|1756
7RQC|1|2A|U|1757
7RQC|1|2A|G|1758
7RQC|1|2A|A|1759
7RQC|1|2A|A|1760
7RQC|1|2A|C|1761
7RQC|1|2A|A|1762
7RQC|1|2A|G|1763
7RQC|1|2A|G|1764
*
7RQC|1|2A|C|1988
7RQC|1|2A|G|1989
7RQC|1|2A|C|1990

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2E

50S ribosomal protein L3

Chain 2O

50S ribosomal protein L14

Chain 2T

50S ribosomal protein L19

Chain 2a

Small subunit ribosomal RNA; SSU rRNA