J5_7RQD_002
3D structure
- PDB id
- 7RQD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site deacylated tRNA analog CACCA, P-site MTI-tripeptidyl-tRNA analog ACCA-ITM, and chloramphenicol at 2.50A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.5 Å
Loop
- Sequence
- CUAAAC*GGGUCGUG*CGAGUAC*GGAAUCUG*UAAG
- Length
- 33 nucleotides
- Bulged bases
- 7RQD|1|1A|U|272|||A, 7RQD|1|1A|U|405
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7RQD|1|1A|C|268
7RQD|1|1A|U|269
7RQD|1|1A|A|270
7RQD|1|1A|A|271
7RQD|1|1A|A|271|||A
7RQD|1|1A|C|271|||B
*
7RQD|1|1A|G|271|||V
7RQD|1|1A|G|271|||W
7RQD|1|1A|G|271|||X
7RQD|1|1A|U|271|||Y
7RQD|1|1A|C|271|||Z
7RQD|1|1A|G|272
7RQD|1|1A|U|272|||A
7RQD|1|1A|G|272|||B
*
7RQD|1|1A|C|366
7RQD|1|1A|G|370
7RQD|1|1A|A|371
7RQD|1|1A|G|372
7RQD|1|1A|U|373
7RQD|1|1A|A|374
7RQD|1|1A|C|375
*
7RQD|1|1A|G|399
7RQD|1|1A|G|400
7RQD|1|1A|A|401
7RQD|1|1A|A|402
7RQD|1|1A|U|403
7RQD|1|1A|C|404
7RQD|1|1A|U|405
7RQD|1|1A|G|406
*
7RQD|1|1A|U|421
7RQD|1|1A|A|422
7RQD|1|1A|A|423
7RQD|1|1A|G|424
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 11
- 50S ribosomal protein L28
- Chain 1I
- 50S ribosomal protein L9
Coloring options: