J5_7RQD_014

3D structure

PDB id

7RQD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site deacylated tRNA analog CACCA, P-site MTI-tripeptidyl-tRNA analog ACCA-ITM, and chloramphenicol at 2.50A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

CGAG*CGUAG*CGAG*CGCAAG*CAAAG

Length

24 nucleotides

Bulged bases

7RQD|1|2A|A|652|||B

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7RQD|1|2A|C|601
7RQD|1|2A|G|602
7RQD|1|2A|A|603
7RQD|1|2A|G|604
*
7RQD|1|2A|C|624
7RQD|1|2A|G|625
7RQD|1|2A|U|626
7RQD|1|2A|A|627
7RQD|1|2A|G|628
*
7RQD|1|2A|C|635
7RQD|1|2A|G|636
7RQD|1|2A|A|637
7RQD|1|2A|G|638
*
7RQD|1|2A|C|650
7RQD|1|2A|G|651
7RQD|1|2A|C|652
7RQD|1|2A|A|652|||A
7RQD|1|2A|A|652|||B
7RQD|1|2A|G|652|||C
*
7RQD|1|2A|C|652|||V
7RQD|1|2A|A|653
7RQD|1|2A|A|654
7RQD|1|2A|A|655
7RQD|1|2A|G|656

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 28

50S ribosomal protein L35

Chain 2F

50S ribosomal protein L4

Chain 2P

50S ribosomal protein L15