J5_7RQE_014

3D structure

PDB id

7RQE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site deacylated tRNA analog CACCA, P-site MAI-tripeptidyl-tRNA analog ACCA-IAM, and chloramphenicol at 2.40A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

CGAG*CGUAG*CGAG*CGCAAG*CAAAG

Length

24 nucleotides

Bulged bases

7RQE|1|2A|A|652|||B

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7RQE|1|2A|C|601
7RQE|1|2A|G|602
7RQE|1|2A|A|603
7RQE|1|2A|G|604
*
7RQE|1|2A|C|624
7RQE|1|2A|G|625
7RQE|1|2A|U|626
7RQE|1|2A|A|627
7RQE|1|2A|G|628
*
7RQE|1|2A|C|635
7RQE|1|2A|G|636
7RQE|1|2A|A|637
7RQE|1|2A|G|638
*
7RQE|1|2A|C|650
7RQE|1|2A|G|651
7RQE|1|2A|C|652
7RQE|1|2A|A|652|||A
7RQE|1|2A|A|652|||B
7RQE|1|2A|G|652|||C
*
7RQE|1|2A|C|652|||V
7RQE|1|2A|A|653
7RQE|1|2A|A|654
7RQE|1|2A|A|655
7RQE|1|2A|G|656

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 28

50S ribosomal protein L35

Chain 2F

50S ribosomal protein L4

Chain 2P

50S ribosomal protein L15