J5_7RQE_015

3D structure

PDB id

7RQE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site deacylated tRNA analog CACCA, P-site MAI-tripeptidyl-tRNA analog ACCA-IAM, and chloramphenicol at 2.40A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

GCAAGUUGG*UG*CC*GUGAACAGG*CGC

Length

25 nucleotides

Bulged bases

7RQE|1|2A|G|1758, 7RQE|1|2A|G|1763

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_7RQE_015 not in the Motif Atlas

Homologous match to J5_9DFE_005

Geometric discrepancy: 0.066

The information below is about J5_9DFE_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_99177.1

Basepair signature

cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

10

Unit IDs

7RQE|1|2A|G|1674
7RQE|1|2A|C|1675
7RQE|1|2A|A|1676
7RQE|1|2A|A|1677
7RQE|1|2A|G|1678
7RQE|1|2A|U|1679
7RQE|1|2A|U|1680
7RQE|1|2A|G|1681
7RQE|1|2A|G|1682
*
7RQE|1|2A|U|1706
7RQE|1|2A|G|1707
*
7RQE|1|2A|C|1751
7RQE|1|2A|C|1752
*
7RQE|1|2A|G|1756
7RQE|1|2A|U|1757
7RQE|1|2A|G|1758
7RQE|1|2A|A|1759
7RQE|1|2A|A|1760
7RQE|1|2A|C|1761
7RQE|1|2A|A|1762
7RQE|1|2A|G|1763
7RQE|1|2A|G|1764
*
7RQE|1|2A|C|1988
7RQE|1|2A|G|1989
7RQE|1|2A|C|1990

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2E

50S ribosomal protein L3

Chain 2O

50S ribosomal protein L14

Chain 2T

50S ribosomal protein L19

Chain 2a

Small subunit ribosomal RNA; SSU rRNA