3D structure

PDB id
7RR5 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of ribosomal complex bound with Rbg1/Tma46
Experimental method
ELECTRON MICROSCOPY
Resolution
3.23 Å

Loop

Sequence
AGAAGACC*GGAUAACUG*CUUCGAUGUC*GGUUUAG*UAGUUU
Length
40 nucleotides
Bulged bases
7RR5|1|C1|A|2404, 7RR5|1|C1|A|2817, 7RR5|1|C1|G|2874, 7RR5|1|C1|U|2978, 7RR5|1|C1|U|2979
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

7RR5|1|C1|A|2399
7RR5|1|C1|G|2400
7RR5|1|C1|A|2401
7RR5|1|C1|A|2402
7RR5|1|C1|G|2403
7RR5|1|C1|A|2404
7RR5|1|C1|C|2405
7RR5|1|C1|C|2406
*
7RR5|1|C1|G|2815
7RR5|1|C1|G|2816
7RR5|1|C1|A|2817
7RR5|1|C1|U|2818
7RR5|1|C1|A|2819
7RR5|1|C1|A|2820
7RR5|1|C1|C|2821
7RR5|1|C1|U|2822
7RR5|1|C1|G|2823
*
7RR5|1|C1|C|2867
7RR5|1|C1|U|2868
7RR5|1|C1|U|2869
7RR5|1|C1|C|2870
7RR5|1|C1|G|2871
7RR5|1|C1|A|2872
7RR5|1|C1|U|2873
7RR5|1|C1|G|2874
7RR5|1|C1|U|2875
7RR5|1|C1|C|2876
*
7RR5|1|C1|G|2951
7RR5|1|C1|G|2952
7RR5|1|C1|U|2953
7RR5|1|C1|U|2954
7RR5|1|C1|U|2955
7RR5|1|C1|A|2956
7RR5|1|C1|G|2957
*
7RR5|1|C1|U|2975
7RR5|1|C1|A|2976
7RR5|1|C1|G|2977
7RR5|1|C1|U|2978
7RR5|1|C1|U|2979
7RR5|1|C1|U|2980

Current chains

Chain C1
25S rRNA

Nearby chains

Chain 5
Eukaryotic translation initiation factor 5A
Chain A
Transfer RNA; tRNA
Chain LA
60S ribosomal protein L2-B
Chain LB
RPL3 isoform 1
Chain LC
RPL4A isoform 1
Chain LI
RPL10 isoform 1
Chain Lb
RPL29 isoform 1
Chain P
Transfer RNA; tRNA

Coloring options:

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