J5_7RR5_007

3D structure

PDB id

7RR5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosomal complex bound with Rbg1/Tma46

Experimental method

ELECTRON MICROSCOPY

Resolution

3.23 Å

Loop

Sequence

CUUGU*AAAUAAC*GGAAUGAG*CGAGGAACAAU*AUAG

Length

35 nucleotides

Bulged bases

7RR5|1|C2|A|541, 7RR5|1|C2|C|543, 7RR5|1|C2|A|544

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7RR5|1|C2|C|31
7RR5|1|C2|U|32
7RR5|1|C2|U|33
7RR5|1|C2|G|34
7RR5|1|C2|U|35
*
7RR5|1|C2|A|473
7RR5|1|C2|A|474
7RR5|1|C2|A|475
7RR5|1|C2|U|476
7RR5|1|C2|A|477
7RR5|1|C2|A|478
7RR5|1|C2|C|479
*
7RR5|1|C2|G|509
7RR5|1|C2|G|510
7RR5|1|C2|A|511
7RR5|1|C2|A|512
7RR5|1|C2|U|513
7RR5|1|C2|G|514
7RR5|1|C2|A|515
7RR5|1|C2|G|516
*
7RR5|1|C2|C|536
7RR5|1|C2|G|537
7RR5|1|C2|A|538
7RR5|1|C2|G|539
7RR5|1|C2|G|540
7RR5|1|C2|A|541
7RR5|1|C2|A|542
7RR5|1|C2|C|543
7RR5|1|C2|A|544
7RR5|1|C2|A|545
7RR5|1|C2|U|546
*
7RR5|1|C2|A|592
7RR5|1|C2|U|593
7RR5|1|C2|A|594
7RR5|1|C2|G|595

Current chains

Chain C2

18S rRNA

Nearby chains

Chain SJ

40S ribosomal protein S9-A

Chain SX

40S ribosomal protein S23

Chain Se

40S ribosomal protein S30

Chain T

Translation machinery-associated protein 46