3D structure

PDB id
7RR5 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of ribosomal complex bound with Rbg1/Tma46
Experimental method
ELECTRON MICROSCOPY
Resolution
3.23 Å

Loop

Sequence
AUAGUUCCUUUACUACAUGG*CAUGCUUAAAA*UG*CGA*UGGUU
Length
41 nucleotides
Bulged bases
7RR5|1|C2|U|128, 7RR5|1|C2|U|132, 7RR5|1|C2|U|134, 7RR5|1|C2|A|140, 7RR5|1|C2|U|141, 7RR5|1|C2|U|178
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

7RR5|1|C2|A|124
7RR5|1|C2|U|125
7RR5|1|C2|A|126
7RR5|1|C2|G|127
7RR5|1|C2|U|128
7RR5|1|C2|U|129
7RR5|1|C2|C|130
7RR5|1|C2|C|131
7RR5|1|C2|U|132
7RR5|1|C2|U|133
7RR5|1|C2|U|134
7RR5|1|C2|A|135
7RR5|1|C2|C|136
7RR5|1|C2|U|137
7RR5|1|C2|A|138
7RR5|1|C2|C|139
7RR5|1|C2|A|140
7RR5|1|C2|U|141
7RR5|1|C2|G|142
7RR5|1|C2|G|143
*
7RR5|1|C2|C|172
7RR5|1|C2|A|173
7RR5|1|C2|U|174
7RR5|1|C2|G|175
7RR5|1|C2|C|176
7RR5|1|C2|U|177
7RR5|1|C2|U|178
7RR5|1|C2|A|179
7RR5|1|C2|A|180
7RR5|1|C2|A|181
7RR5|1|C2|A|182
*
7RR5|1|C2|U|203
7RR5|1|C2|G|204
*
7RR5|1|C2|C|263
7RR5|1|C2|G|264
7RR5|1|C2|A|265
*
7RR5|1|C2|U|289
7RR5|1|C2|G|290
7RR5|1|C2|G|291
7RR5|1|C2|U|292
7RR5|1|C2|U|293

Current chains

Chain C2
18S rRNA

Nearby chains

Chain SE
40S ribosomal protein S4
Chain SG
40S ribosomal protein S6
Chain SI
RPS8A isoform 1

Coloring options:

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