J5_7RR5_011

3D structure

PDB id

7RR5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosomal complex bound with Rbg1/Tma46

Experimental method

ELECTRON MICROSCOPY

Resolution

3.23 Å

Loop

Sequence

ACUUUG*UUUCCUU*GACUUU*AUAGAAUAGGA*UAAUGAU

Length

37 nucleotides

Bulged bases

7RR5|1|C2|U|639, 7RR5|1|C2|U|694, 7RR5|1|C2|C|696, 7RR5|1|C2|C|697, 7RR5|1|C2|U|813, 7RR5|1|C2|G|815, 7RR5|1|C2|A|856

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7RR5|1|C2|A|636
7RR5|1|C2|C|637
7RR5|1|C2|U|638
7RR5|1|C2|U|639
7RR5|1|C2|U|640
7RR5|1|C2|G|641
*
7RR5|1|C2|U|693
7RR5|1|C2|U|694
7RR5|1|C2|U|695
7RR5|1|C2|C|696
7RR5|1|C2|C|697
7RR5|1|C2|U|698
7RR5|1|C2|U|699
*
7RR5|1|C2|G|739
7RR5|1|C2|A|740
7RR5|1|C2|C|741
7RR5|1|C2|U|742
7RR5|1|C2|U|743
7RR5|1|C2|U|744
*
7RR5|1|C2|A|807
7RR5|1|C2|U|808
7RR5|1|C2|A|809
7RR5|1|C2|G|810
7RR5|1|C2|A|811
7RR5|1|C2|A|812
7RR5|1|C2|U|813
7RR5|1|C2|A|814
7RR5|1|C2|G|815
7RR5|1|C2|G|816
7RR5|1|C2|A|817
*
7RR5|1|C2|U|854
7RR5|1|C2|A|855
7RR5|1|C2|A|856
7RR5|1|C2|U|857
7RR5|1|C2|G|858
7RR5|1|C2|A|859
7RR5|1|C2|U|860

Current chains

Chain C2

18S rRNA

Nearby chains

Chain LR

60S ribosomal protein L19-A

Chain SE

40S ribosomal protein S4

Chain SH

40S ribosomal protein S7

Chain SL

40S ribosomal protein S11-B

Chain SN

40S ribosomal protein S13

Chain SW

RPS22A isoform 1