J5_7RYF_001

3D structure

PDB id

7RYF (explore in PDB, NAKB, or RNA 3D Hub)

Description

A. baumannii Ribosome-TP-6076 complex: P-site tRNA 70S

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

CGAUGAAA*UGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

7RYF|1|A|U|57

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_7RYF_001 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.0976

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

7RYF|1|A|C|54
7RYF|1|A|G|55
7RYF|1|A|A|56
7RYF|1|A|U|57
7RYF|1|A|G|58
7RYF|1|A|A|59
7RYF|1|A|A|60
7RYF|1|A|A|61
*
7RYF|1|A|U|123
7RYF|1|A|G|124
7RYF|1|A|A|125
7RYF|1|A|A|126
7RYF|1|A|U|127
7RYF|1|A|G|128
*
7RYF|1|A|C|137
7RYF|1|A|A|138
*
7RYF|1|A|U|155
7RYF|1|A|A|156
7RYF|1|A|U|157
*
7RYF|1|A|A|183
7RYF|1|A|G|184
7RYF|1|A|G|185

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 1

50S ribosomal protein L34