J5_7RYH_001

3D structure

PDB id

7RYH (explore in PDB, NAKB, or RNA 3D Hub)

Description

A. baumannii Ribosome-TP-6076 complex: Empty 70S

Experimental method

ELECTRON MICROSCOPY

Resolution

2.43 Å

Loop

Sequence

CGAUGAAA*UGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

7RYH|1|A|U|57

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_7RYH_001 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.1017

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

7RYH|1|A|C|54
7RYH|1|A|G|55
7RYH|1|A|A|56
7RYH|1|A|U|57
7RYH|1|A|G|58
7RYH|1|A|A|59
7RYH|1|A|A|60
7RYH|1|A|A|61
*
7RYH|1|A|U|123
7RYH|1|A|G|124
7RYH|1|A|A|125
7RYH|1|A|A|126
7RYH|1|A|U|127
7RYH|1|A|G|128
*
7RYH|1|A|C|137
7RYH|1|A|A|138
*
7RYH|1|A|U|155
7RYH|1|A|A|156
7RYH|1|A|U|157
*
7RYH|1|A|A|183
7RYH|1|A|G|184
7RYH|1|A|G|185

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 1

50S ribosomal protein L34