J5_7S1G_004

3D structure

PDB id

7S1G (explore in PDB, NAKB, or RNA 3D Hub)

Description

wild-type Escherichia coli stalled ribosome with antibiotic linezolid

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

7S1G|1|I|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_7S1G_004 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.0773

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

7S1G|1|I|C|47
7S1G|1|I|G|48
7S1G|1|I|A|49
7S1G|1|I|U|50
7S1G|1|I|G|51
7S1G|1|I|A|52
7S1G|1|I|A|53
7S1G|1|I|G|54
*
7S1G|1|I|C|116
7S1G|1|I|G|117
7S1G|1|I|A|118
7S1G|1|I|A|119
7S1G|1|I|U|120
7S1G|1|I|G|121
*
7S1G|1|I|C|130
7S1G|1|I|A|131
*
7S1G|1|I|U|148
7S1G|1|I|A|149
7S1G|1|I|U|150
*
7S1G|1|I|A|176
7S1G|1|I|G|177
7S1G|1|I|G|178

Current chains

Chain I

23S rRNA

Nearby chains

Chain k

50S ribosomal protein L34