J5_7S1I_002

3D structure

PDB id

7S1I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wild-type Escherichia coli stalled ribosome with antibiotic radezolid

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

CUGG*CGUG*CUUUCAG*CAGAAGAAG*CAAG

Length

28 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_7S1I_002 not in the Motif Atlas

Homologous match to J5_5J7L_002

Geometric discrepancy: 0.0547

The information below is about J5_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_67416.1

Basepair signature

cWW-F-F-F-cWW-tHW-F-tHW-tSS-cWW-cHW-cWW-F-cWW-F-cWW-F-F

Number of instances in this motif group

1

Unit IDs

7S1I|1|C|C|36
7S1I|1|C|U|37
7S1I|1|C|G|38
7S1I|1|C|G|39
*
7S1I|1|C|C|403
7S1I|1|C|G|404
7S1I|1|C|U|405
7S1I|1|C|G|406
*
7S1I|1|C|C|436
7S1I|1|C|U|437
7S1I|1|C|U|438
7S1I|1|C|U|439
7S1I|1|C|C|440
7S1I|1|C|A|441
7S1I|1|C|G|442
*
7S1I|1|C|C|492
7S1I|1|C|A|493
7S1I|1|C|G|494
7S1I|1|C|A|495
7S1I|1|C|A|496
7S1I|1|C|G|497
7S1I|1|C|A|498
7S1I|1|C|A|499
7S1I|1|C|G|500
*
7S1I|1|C|C|545
7S1I|1|C|A|546
7S1I|1|C|A|547
7S1I|1|C|G|548

Current chains

Chain C

16S rRNA

Nearby chains

Chain F

30S ribosomal protein S4

Chain t

30S ribosomal protein S12