J5_7S1J_004

3D structure

PDB id

7S1J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wild-type Escherichia coli ribosome with antibiotic radezolid

Experimental method

ELECTRON MICROSCOPY

Resolution

2.47 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

7S1J|1|I|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_7S1J_004 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.0759

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

7S1J|1|I|C|47
7S1J|1|I|G|48
7S1J|1|I|A|49
7S1J|1|I|U|50
7S1J|1|I|G|51
7S1J|1|I|A|52
7S1J|1|I|A|53
7S1J|1|I|G|54
*
7S1J|1|I|C|116
7S1J|1|I|G|117
7S1J|1|I|A|118
7S1J|1|I|A|119
7S1J|1|I|U|120
7S1J|1|I|G|121
*
7S1J|1|I|C|130
7S1J|1|I|A|131
*
7S1J|1|I|U|148
7S1J|1|I|A|149
7S1J|1|I|U|150
*
7S1J|1|I|A|176
7S1J|1|I|G|177
7S1J|1|I|G|178

Current chains

Chain I

23S rRNA

Nearby chains

Chain k

50S ribosomal protein L34