J5_7S1K_008
3D structure
- PDB id
- 7S1K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cfr-modified Escherichia coli stalled ribosome with antibiotic radezolid
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.42 Å
Loop
- Sequence
- GAAAGACC*GGA(H2U)AACA*UCG(8AH)(PSU)GU*GUUUAG*CGGUCC
- Length
- 35 nucleotides
- Bulged bases
- 7S1K|1|I|A|2062, 7S1K|1|I|A|2448, 7S1K|1|I|H2U|2449, 7S1K|1|I|U|2609
- QA status
- Modified nucleotides: H2U, 8AH, PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7S1K|1|I|G|2057
7S1K|1|I|A|2058
7S1K|1|I|A|2059
7S1K|1|I|A|2060
7S1K|1|I|G|2061
7S1K|1|I|A|2062
7S1K|1|I|C|2063
7S1K|1|I|C|2064
*
7S1K|1|I|G|2446
7S1K|1|I|G|2447
7S1K|1|I|A|2448
7S1K|1|I|H2U|2449
7S1K|1|I|A|2450
7S1K|1|I|A|2451
7S1K|1|I|C|2452
7S1K|1|I|A|2453
*
7S1K|1|I|U|2500
7S1K|1|I|C|2501
7S1K|1|I|G|2502
7S1K|1|I|8AH|2503
7S1K|1|I|PSU|2504
7S1K|1|I|G|2505
7S1K|1|I|U|2506||A
*
7S1K|1|I|G|2583
7S1K|1|I|U|2584
7S1K|1|I|U|2585
7S1K|1|I|U|2586
7S1K|1|I|A|2587
7S1K|1|I|G|2588
*
7S1K|1|I|C|2606
7S1K|1|I|G|2607
7S1K|1|I|G|2608
7S1K|1|I|U|2609
7S1K|1|I|C|2610
7S1K|1|I|C|2611
Current chains
- Chain I
- 23S rRNA
Nearby chains
- Chain A
- Transfer RNA; tRNA
- Chain K
- 50S ribosomal protein L2
- Chain L
- 50S ribosomal protein L3
- Chain M
- 50S ribosomal protein L4
- Chain T
- 50S ribosomal protein L15
- Chain U
- 50S ribosomal protein L16
- Chain a
- 50S ribosomal protein L22
- Chain i
- 50S ribosomal protein L32
- Chain s
- nascent peptide chain
Coloring options: