J5_7SA4_008

3D structure

PDB id

7SA4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Damaged 70S ribosome with PrfH bound

Experimental method

ELECTRON MICROSCOPY

Resolution

2.55 Å

Loop

Sequence

CUGG*CGUG*CUUUCAG*CAGAAGAAG*CAAG

Length

28 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_7SA4_008 not in the Motif Atlas

Homologous match to J5_5J7L_002

Geometric discrepancy: 0.0499

The information below is about J5_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_67416.1

Basepair signature

cWW-F-F-F-cWW-tHW-F-tHW-tSS-cWW-cHW-cWW-F-cWW-F-cWW-F-F

Number of instances in this motif group

1

Unit IDs

7SA4|1|2|C|36
7SA4|1|2|U|37
7SA4|1|2|G|38
7SA4|1|2|G|39
*
7SA4|1|2|C|403
7SA4|1|2|G|404
7SA4|1|2|U|405
7SA4|1|2|G|406
*
7SA4|1|2|C|436
7SA4|1|2|U|437
7SA4|1|2|U|438
7SA4|1|2|U|439
7SA4|1|2|C|440
7SA4|1|2|A|441
7SA4|1|2|G|442
*
7SA4|1|2|C|492
7SA4|1|2|A|493
7SA4|1|2|G|494
7SA4|1|2|A|495
7SA4|1|2|A|496
7SA4|1|2|G|497
7SA4|1|2|A|498
7SA4|1|2|A|499
7SA4|1|2|G|500
*
7SA4|1|2|C|545
7SA4|1|2|A|546
7SA4|1|2|A|547
7SA4|1|2|G|548

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain i

30S ribosomal protein S4

Chain q

30S ribosomal protein S12