J5_7SFR_010
3D structure
- PDB id
- 7SFR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Unmethylated Mtb Ribosome 50S with SEQ-9
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- CUGG*CGUG*CUUUCAC*GAGAAGAAG*CGAG
- Length
- 28 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_7SFR_010 not in the Motif Atlas
- Homologous match to J5_5J7L_002
- Geometric discrepancy: 0.1413
- The information below is about J5_5J7L_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_67416.1
- Basepair signature
- cWW-F-F-F-cWW-tHW-F-tHW-tSS-cWW-cHW-cWW-F-cWW-F-cWW-F-F
- Number of instances in this motif group
- 1
Unit IDs
7SFR|1|a|C|39
7SFR|1|a|U|40
7SFR|1|a|G|41
7SFR|1|a|G|42
*
7SFR|1|a|C|402
7SFR|1|a|G|403
7SFR|1|a|U|404
7SFR|1|a|G|405
*
7SFR|1|a|C|435
7SFR|1|a|U|436
7SFR|1|a|U|437
7SFR|1|a|U|438
7SFR|1|a|C|439
7SFR|1|a|A|440
7SFR|1|a|C|441
*
7SFR|1|a|G|483
7SFR|1|a|A|484
7SFR|1|a|G|485
7SFR|1|a|A|486
7SFR|1|a|A|487
7SFR|1|a|G|488
7SFR|1|a|A|489
7SFR|1|a|A|490
7SFR|1|a|G|491
*
7SFR|1|a|C|536
7SFR|1|a|G|537
7SFR|1|a|A|538
7SFR|1|a|G|539
Current chains
- Chain a
- 16S rRNA
Nearby chains
- Chain d
- 30S ribosomal protein S4
- Chain l
- 30S ribosomal protein S12
Coloring options: