J5_7SS9_002

3D structure

PDB id

7SS9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Late translocation intermediate with EF-G partially dissociated (Structure V)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

7SS9|1|1|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_7SS9_002 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.1611

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

7SS9|1|1|C|47
7SS9|1|1|G|48
7SS9|1|1|A|49
7SS9|1|1|U|50
7SS9|1|1|G|51
7SS9|1|1|A|52
7SS9|1|1|A|53
7SS9|1|1|G|54
*
7SS9|1|1|C|116
7SS9|1|1|G|117
7SS9|1|1|A|118
7SS9|1|1|A|119
7SS9|1|1|U|120
7SS9|1|1|G|121
*
7SS9|1|1|C|130
7SS9|1|1|A|131
*
7SS9|1|1|U|148
7SS9|1|1|A|149
7SS9|1|1|U|150
*
7SS9|1|1|A|176
7SS9|1|1|G|177
7SS9|1|1|G|178

Current chains

Chain 1

23S rRNA

Nearby chains

Chain D

50S ribosomal protein L34