J5_7ST2_001

3D structure

PDB id

7ST2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Post translocation, non-rotated 70S ribosome with EF-G dissociated (Structure VII)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

7ST2|1|1|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_7ST2_001 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.0639

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

7ST2|1|1|C|47
7ST2|1|1|G|48
7ST2|1|1|A|49
7ST2|1|1|U|50
7ST2|1|1|G|51
7ST2|1|1|A|52
7ST2|1|1|A|53
7ST2|1|1|G|54
*
7ST2|1|1|C|116
7ST2|1|1|G|117
7ST2|1|1|A|118
7ST2|1|1|A|119
7ST2|1|1|U|120
7ST2|1|1|G|121
*
7ST2|1|1|C|130
7ST2|1|1|A|131
*
7ST2|1|1|U|148
7ST2|1|1|A|149
7ST2|1|1|U|150
*
7ST2|1|1|A|176
7ST2|1|1|G|177
7ST2|1|1|G|178

Current chains

Chain 1

23S rRNA

Nearby chains

Chain D

50S ribosomal protein L34