J5_7ST7_001
3D structure
- PDB id
- 7ST7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Pre translocation intermediate stalled with viomycin and bound with EF-G in a GDP and Pi state (Structure III-vio)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CGAUGAAG*CGAAUG*CA*UAU*AGG
- Length
- 22 nucleotides
- Bulged bases
- 7ST7|1|1|U|50
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_7ST7_001 not in the Motif Atlas
- Homologous match to J5_5J7L_013
- Geometric discrepancy: 0.0987
- The information below is about J5_5J7L_013
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_01737.2
- Basepair signature
- cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F
- Number of instances in this motif group
- 5
Unit IDs
7ST7|1|1|C|47
7ST7|1|1|G|48
7ST7|1|1|A|49
7ST7|1|1|U|50
7ST7|1|1|G|51
7ST7|1|1|A|52
7ST7|1|1|A|53
7ST7|1|1|G|54
*
7ST7|1|1|C|116
7ST7|1|1|G|117
7ST7|1|1|A|118
7ST7|1|1|A|119
7ST7|1|1|U|120
7ST7|1|1|G|121
*
7ST7|1|1|C|130
7ST7|1|1|A|131
*
7ST7|1|1|U|148
7ST7|1|1|A|149
7ST7|1|1|U|150
*
7ST7|1|1|A|176
7ST7|1|1|G|177
7ST7|1|1|G|178
Current chains
- Chain 1
- 23S rRNA
Nearby chains
- Chain D
- 50S ribosomal protein L34
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