3D structure

PDB id
7ST7 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Pre translocation intermediate stalled with viomycin and bound with EF-G in a GDP and Pi state (Structure III-vio)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
CUGG*CGUG*CUUUCAG*CAGAAGAAG*CAAG
Length
28 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_7ST7_008 not in the Motif Atlas
Homologous match to J5_5J7L_002
Geometric discrepancy: 0.1053
The information below is about J5_5J7L_002
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_67416.1
Basepair signature
cWW-F-F-F-cWW-tHW-F-tHW-tSS-cWW-cHW-cWW-F-cWW-F-cWW-F-F
Number of instances in this motif group
1

Unit IDs

7ST7|1|3|C|36
7ST7|1|3|U|37
7ST7|1|3|G|38
7ST7|1|3|G|39
*
7ST7|1|3|C|403
7ST7|1|3|G|404
7ST7|1|3|U|405
7ST7|1|3|G|406
*
7ST7|1|3|C|436
7ST7|1|3|U|437
7ST7|1|3|U|438
7ST7|1|3|U|439
7ST7|1|3|C|440
7ST7|1|3|A|441
7ST7|1|3|G|442
*
7ST7|1|3|C|492
7ST7|1|3|A|493
7ST7|1|3|G|494
7ST7|1|3|A|495
7ST7|1|3|A|496
7ST7|1|3|G|497
7ST7|1|3|A|498
7ST7|1|3|A|499
7ST7|1|3|G|500
*
7ST7|1|3|C|545
7ST7|1|3|A|546
7ST7|1|3|A|547
7ST7|1|3|G|548

Current chains

Chain 3
16S rRNA

Nearby chains

Chain I
30S ribosomal protein S4
Chain Q
30S ribosomal protein S12

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.1673 s