3D structure

PDB id
7ST7 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Pre translocation intermediate stalled with viomycin and bound with EF-G in a GDP and Pi state (Structure III-vio)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
CAAG*CGGACGGG*CAC*GAC*GGCAG
Length
23 nucleotides
Bulged bases
7ST7|1|3|A|109, 7ST7|1|3|C|352
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_7ST7_009 not in the Motif Atlas
Homologous match to J5_5J7L_003
Geometric discrepancy: 0.1135
The information below is about J5_5J7L_003
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_59910.6
Basepair signature
cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
Number of instances in this motif group
4

Unit IDs

7ST7|1|3|C|58
7ST7|1|3|A|59
7ST7|1|3|A|60
7ST7|1|3|G|61
*
7ST7|1|3|C|106
7ST7|1|3|G|107
7ST7|1|3|G|108
7ST7|1|3|A|109
7ST7|1|3|C|110
7ST7|1|3|G|111
7ST7|1|3|G|112
7ST7|1|3|G|113
*
7ST7|1|3|C|314
7ST7|1|3|A|315
7ST7|1|3|C|316
*
7ST7|1|3|G|337
7ST7|1|3|A|338
7ST7|1|3|C|339
*
7ST7|1|3|G|350
7ST7|1|3|G|351
7ST7|1|3|C|352
7ST7|1|3|A|353
7ST7|1|3|G|354

Current chains

Chain 3
16S rRNA

Nearby chains

Chain 8
Elongation factor G
Chain U
30S ribosomal protein S16
Chain Y
30S ribosomal protein S20
Chain k
50S ribosomal protein L14
Chain p
50S ribosomal protein L19

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.149 s