J5_7SYG_001

3D structure

PDB id

7SYG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 1(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

CUUGU*AAAUAACA*UGGAAUG*CCAUUGG*CCAAUAG

Length

34 nucleotides

Bulged bases

7SYG|1|2|C|593

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7SYG|1|2|C|30
7SYG|1|2|U|31
7SYG|1|2|U|32
7SYG|1|2|G|33
7SYG|1|2|U|34
*
7SYG|1|2|A|521
7SYG|1|2|A|522
7SYG|1|2|A|523
7SYG|1|2|U|524
7SYG|1|2|A|525
7SYG|1|2|A|526
7SYG|1|2|C|527
7SYG|1|2|A|528
*
7SYG|1|2|U|557
7SYG|1|2|G|558
7SYG|1|2|G|559
7SYG|1|2|A|560
7SYG|1|2|A|561
7SYG|1|2|U|562
7SYG|1|2|G|563
*
7SYG|1|2|C|592
7SYG|1|2|C|593
7SYG|1|2|A|594
7SYG|1|2|U|595
7SYG|1|2|U|596
7SYG|1|2|G|597
7SYG|1|2|G|598
*
7SYG|1|2|C|638
7SYG|1|2|C|639
7SYG|1|2|A|640
7SYG|1|2|A|641
7SYG|1|2|U|642
7SYG|1|2|A|643
7SYG|1|2|G|644

Current chains

Chain 2

18S rRNA

Nearby chains

Chain K

uS4

Chain Y

uS12

Chain f

eS30