J5_7SYG_003

3D structure

PDB id

7SYG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 1(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

CAUGUCUAAG*CUGCGAAUGGCU*AGAGG*CAC*GGCAG

Length

35 nucleotides

Bulged bases

7SYG|1|2|U|55, 7SYG|1|2|U|59, 7SYG|1|2|A|60, 7SYG|1|2|A|61, 7SYG|1|2|A|92, 7SYG|1|2|C|472

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7SYG|1|2|C|53
7SYG|1|2|A|54
7SYG|1|2|U|55
7SYG|1|2|G|56
7SYG|1|2|U|57
7SYG|1|2|C|58
7SYG|1|2|U|59
7SYG|1|2|A|60
7SYG|1|2|A|61
7SYG|1|2|G|62
*
7SYG|1|2|C|86
7SYG|1|2|U|87
7SYG|1|2|G|88
7SYG|1|2|C|89
7SYG|1|2|G|90
7SYG|1|2|A|91
7SYG|1|2|A|92
7SYG|1|2|U|93
7SYG|1|2|G|94
7SYG|1|2|G|95
7SYG|1|2|C|96
7SYG|1|2|U|97
*
7SYG|1|2|A|433
7SYG|1|2|G|434
7SYG|1|2|A|435
7SYG|1|2|G|436
7SYG|1|2|G|437
*
7SYG|1|2|C|457
7SYG|1|2|A|458
7SYG|1|2|C|459
*
7SYG|1|2|G|470
7SYG|1|2|G|471
7SYG|1|2|C|472
7SYG|1|2|A|473
7SYG|1|2|G|474

Current chains

Chain 2

18S rRNA

Nearby chains

Chain F

40S ribosomal protein S4

Chain H

eS6

Chain J

eS8

Chain K

uS4

Chain Z

40S ribosomal protein S24