J5_7SYG_008

3D structure

PDB id

7SYG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 1(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

GUCGCUC*GGG*UGCAUU*ACCUCGGGCCG*CGACC

Length

32 nucleotides

Bulged bases

7SYG|1|2|G|126, 7SYG|1|2|C|127, 7SYG|1|2|U|305, 7SYG|1|2|G|307

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7SYG|1|2|G|123
7SYG|1|2|U|124
7SYG|1|2|C|125
7SYG|1|2|G|126
7SYG|1|2|C|127
7SYG|1|2|U|128
7SYG|1|2|C|129
*
7SYG|1|2|G|183
7SYG|1|2|G|184
7SYG|1|2|G|185
*
7SYG|1|2|U|214
7SYG|1|2|G|215
7SYG|1|2|C|216
7SYG|1|2|A|217
7SYG|1|2|U|218
7SYG|1|2|U|219
*
7SYG|1|2|A|302
7SYG|1|2|C|303
7SYG|1|2|C|304
7SYG|1|2|U|305
7SYG|1|2|C|306
7SYG|1|2|G|307
7SYG|1|2|G|308
7SYG|1|2|G|309
7SYG|1|2|C|310
7SYG|1|2|C|311
7SYG|1|2|G|312
*
7SYG|1|2|C|337
7SYG|1|2|G|338
7SYG|1|2|A|339
7SYG|1|2|C|340
7SYG|1|2|C|341

Current chains

Chain 2

18S rRNA

Nearby chains

Chain F

40S ribosomal protein S4

Chain H

eS6

Chain J

eS8