J5_7SYK_001

3D structure

PDB id

7SYK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 5(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

CUUGU*AAAUAACA*UGGAAUG*CCAUU*AAUAG

Length

30 nucleotides

Bulged bases

7SYK|1|2|C|593

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7SYK|1|2|C|30
7SYK|1|2|U|31
7SYK|1|2|U|32
7SYK|1|2|G|33
7SYK|1|2|U|34
*
7SYK|1|2|A|521
7SYK|1|2|A|522
7SYK|1|2|A|523
7SYK|1|2|U|524
7SYK|1|2|A|525
7SYK|1|2|A|526
7SYK|1|2|C|527
7SYK|1|2|A|528
*
7SYK|1|2|U|557
7SYK|1|2|G|558
7SYK|1|2|G|559
7SYK|1|2|A|560
7SYK|1|2|A|561
7SYK|1|2|U|562
7SYK|1|2|G|563
*
7SYK|1|2|C|592
7SYK|1|2|C|593
7SYK|1|2|A|594
7SYK|1|2|U|595
7SYK|1|2|U|596
*
7SYK|1|2|A|640
7SYK|1|2|A|641
7SYK|1|2|U|642
7SYK|1|2|A|643
7SYK|1|2|G|644

Current chains

Chain 2

18S rRNA

Nearby chains

Chain K

uS4

Chain Y

uS12

Chain f

eS30