J5_7SYK_003

3D structure

PDB id

7SYK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 5(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

CAUGUCUAAG*CUGCGAAUGGCU*AGAG*CAC*GGCAG

Length

34 nucleotides

Bulged bases

7SYK|1|2|U|55, 7SYK|1|2|A|92, 7SYK|1|2|C|472

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7SYK|1|2|C|53
7SYK|1|2|A|54
7SYK|1|2|U|55
7SYK|1|2|G|56
7SYK|1|2|U|57
7SYK|1|2|C|58
7SYK|1|2|U|59
7SYK|1|2|A|60
7SYK|1|2|A|61
7SYK|1|2|G|62
*
7SYK|1|2|C|86
7SYK|1|2|U|87
7SYK|1|2|G|88
7SYK|1|2|C|89
7SYK|1|2|G|90
7SYK|1|2|A|91
7SYK|1|2|A|92
7SYK|1|2|U|93
7SYK|1|2|G|94
7SYK|1|2|G|95
7SYK|1|2|C|96
7SYK|1|2|U|97
*
7SYK|1|2|A|433
7SYK|1|2|G|434
7SYK|1|2|A|435
7SYK|1|2|G|436
*
7SYK|1|2|C|457
7SYK|1|2|A|458
7SYK|1|2|C|459
*
7SYK|1|2|G|470
7SYK|1|2|G|471
7SYK|1|2|C|472
7SYK|1|2|A|473
7SYK|1|2|G|474

Current chains

Chain 2

18S rRNA

Nearby chains

Chain F

40S ribosomal protein S4

Chain H

eS6

Chain J

eS8

Chain K

uS4

Chain Z

40S ribosomal protein S24