J5_7SYL_002
3D structure
- PDB id
- 7SYL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the HCV IRES bound to the 40S ribosomal subunit, closed conformation. Structure 6(delta dII)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.5 Å
Loop
- Sequence
- CUUGU*AAAUAACA*UGGAAUGAGUCCA*UUAACGAGGAUCCAUU*AAUAG
- Length
- 47 nucleotides
- Bulged bases
- 7SYL|1|2|C|593
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7SYL|1|2|C|30
7SYL|1|2|U|31
7SYL|1|2|U|32
7SYL|1|2|G|33
7SYL|1|2|U|34
*
7SYL|1|2|A|521
7SYL|1|2|A|522
7SYL|1|2|A|523
7SYL|1|2|U|524
7SYL|1|2|A|525
7SYL|1|2|A|526
7SYL|1|2|C|527
7SYL|1|2|A|528
*
7SYL|1|2|U|557
7SYL|1|2|G|558
7SYL|1|2|G|559
7SYL|1|2|A|560
7SYL|1|2|A|561
7SYL|1|2|U|562
7SYL|1|2|G|563
7SYL|1|2|A|564
7SYL|1|2|G|565
7SYL|1|2|U|566
7SYL|1|2|C|567
7SYL|1|2|C|568
7SYL|1|2|A|569
*
7SYL|1|2|U|581
7SYL|1|2|U|582
7SYL|1|2|A|583
7SYL|1|2|A|584
7SYL|1|2|C|585
7SYL|1|2|G|586
7SYL|1|2|A|587
7SYL|1|2|G|588
7SYL|1|2|G|589
7SYL|1|2|A|590
7SYL|1|2|U|591
7SYL|1|2|C|592
7SYL|1|2|C|593
7SYL|1|2|A|594
7SYL|1|2|U|595
7SYL|1|2|U|596
*
7SYL|1|2|A|640
7SYL|1|2|A|641
7SYL|1|2|U|642
7SYL|1|2|A|643
7SYL|1|2|G|644
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain K
- uS4
- Chain Y
- uS12
- Chain Z
- 40S ribosomal protein S24
- Chain f
- eS30
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