J5_7SYL_003

3D structure

PDB id

7SYL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES bound to the 40S ribosomal subunit, closed conformation. Structure 6(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

CAUG*CGAAUGGC*GAG*CACAU*AAGGCAG

Length

27 nucleotides

Bulged bases

7SYL|1|2|U|55, 7SYL|1|2|A|92, 7SYL|1|2|C|472

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7SYL|1|2|C|53
7SYL|1|2|A|54
7SYL|1|2|U|55
7SYL|1|2|G|56
*
7SYL|1|2|C|89
7SYL|1|2|G|90
7SYL|1|2|A|91
7SYL|1|2|A|92
7SYL|1|2|U|93
7SYL|1|2|G|94
7SYL|1|2|G|95
7SYL|1|2|C|96
*
7SYL|1|2|G|434
7SYL|1|2|A|435
7SYL|1|2|G|436
*
7SYL|1|2|C|457
7SYL|1|2|A|458
7SYL|1|2|C|459
7SYL|1|2|A|460
7SYL|1|2|U|461
*
7SYL|1|2|A|468
7SYL|1|2|A|469
7SYL|1|2|G|470
7SYL|1|2|G|471
7SYL|1|2|C|472
7SYL|1|2|A|473
7SYL|1|2|G|474

Current chains

Chain 2

18S rRNA

Nearby chains

Chain F

40S ribosomal protein S4

Chain H

eS6

Chain J

eS8

Chain K

uS4

Chain Z

40S ribosomal protein S24