J5_7SYL_004

3D structure

PDB id

7SYL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES bound to the 40S ribosomal subunit, closed conformation. Structure 6(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

GUCGCUC*GGG*UGC*GCCG*CGACC

Length

22 nucleotides

Bulged bases

7SYL|1|2|G|126, 7SYL|1|2|C|127

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7SYL|1|2|G|123
7SYL|1|2|U|124
7SYL|1|2|C|125
7SYL|1|2|G|126
7SYL|1|2|C|127
7SYL|1|2|U|128
7SYL|1|2|C|129
*
7SYL|1|2|G|183
7SYL|1|2|G|184
7SYL|1|2|G|185
*
7SYL|1|2|U|214
7SYL|1|2|G|215
7SYL|1|2|C|216
*
7SYL|1|2|G|309
7SYL|1|2|C|310
7SYL|1|2|C|311
7SYL|1|2|G|312
*
7SYL|1|2|C|337
7SYL|1|2|G|338
7SYL|1|2|A|339
7SYL|1|2|C|340
7SYL|1|2|C|341

Current chains

Chain 2

18S rRNA

Nearby chains

Chain F

40S ribosomal protein S4

Chain H

eS6

Chain J

eS8