J5_7SYM_001

3D structure

PDB id

7SYM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES bound to the 40S ribosomal subunit, head opening. Structure 7(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.8 Å

Loop

Sequence

CUUGU*AAAUAACAAUAC*GUAAUUGGAAUG*CCAUUGGAGGGCAAGUC*GCUCCAAUAG

Length

56 nucleotides

Bulged bases

7SYM|1|2|A|555, 7SYM|1|2|C|593, 7SYM|1|2|U|607

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7SYM|1|2|C|30
7SYM|1|2|U|31
7SYM|1|2|U|32
7SYM|1|2|G|33
7SYM|1|2|U|34
*
7SYM|1|2|A|521
7SYM|1|2|A|522
7SYM|1|2|A|523
7SYM|1|2|U|524
7SYM|1|2|A|525
7SYM|1|2|A|526
7SYM|1|2|C|527
7SYM|1|2|A|528
7SYM|1|2|A|529
7SYM|1|2|U|530
7SYM|1|2|A|531
7SYM|1|2|C|532
*
7SYM|1|2|G|552
7SYM|1|2|U|553
7SYM|1|2|A|554
7SYM|1|2|A|555
7SYM|1|2|U|556
7SYM|1|2|U|557
7SYM|1|2|G|558
7SYM|1|2|G|559
7SYM|1|2|A|560
7SYM|1|2|A|561
7SYM|1|2|U|562
7SYM|1|2|G|563
*
7SYM|1|2|C|592
7SYM|1|2|C|593
7SYM|1|2|A|594
7SYM|1|2|U|595
7SYM|1|2|U|596
7SYM|1|2|G|597
7SYM|1|2|G|598
7SYM|1|2|A|599
7SYM|1|2|G|600
7SYM|1|2|G|601
7SYM|1|2|G|602
7SYM|1|2|C|603
7SYM|1|2|A|604
7SYM|1|2|A|605
7SYM|1|2|G|606
7SYM|1|2|U|607
7SYM|1|2|C|608
*
7SYM|1|2|G|635
7SYM|1|2|C|636
7SYM|1|2|U|637
7SYM|1|2|C|638
7SYM|1|2|C|639
7SYM|1|2|A|640
7SYM|1|2|A|641
7SYM|1|2|U|642
7SYM|1|2|A|643
7SYM|1|2|G|644

Current chains

Chain 2

18S rRNA

Nearby chains

Chain D

40S ribosomal protein S2

Chain E

uS3

Chain K

uS4

Chain Y

uS12

Chain f

eS30