J5_7SYN_002

3D structure

PDB id

7SYN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES bound to the 40S ribosomal subunit, head opening. Structure 8(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CUUGU*AAAUAACA*UGGAAUGAG*CGAGGAUCCAUUGG*CCAAUAG

Length

43 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7SYN|1|2|C|30
7SYN|1|2|U|31
7SYN|1|2|U|32
7SYN|1|2|G|33
7SYN|1|2|U|34
*
7SYN|1|2|A|521
7SYN|1|2|A|522
7SYN|1|2|A|523
7SYN|1|2|U|524
7SYN|1|2|A|525
7SYN|1|2|A|526
7SYN|1|2|C|527
7SYN|1|2|A|528
*
7SYN|1|2|U|557
7SYN|1|2|G|558
7SYN|1|2|G|559
7SYN|1|2|A|560
7SYN|1|2|A|561
7SYN|1|2|U|562
7SYN|1|2|G|563
7SYN|1|2|A|564
7SYN|1|2|G|565
*
7SYN|1|2|C|585
7SYN|1|2|G|586
7SYN|1|2|A|587
7SYN|1|2|G|588
7SYN|1|2|G|589
7SYN|1|2|A|590
7SYN|1|2|U|591
7SYN|1|2|C|592
7SYN|1|2|C|593
7SYN|1|2|A|594
7SYN|1|2|U|595
7SYN|1|2|U|596
7SYN|1|2|G|597
7SYN|1|2|G|598
*
7SYN|1|2|C|638
7SYN|1|2|C|639
7SYN|1|2|A|640
7SYN|1|2|A|641
7SYN|1|2|U|642
7SYN|1|2|A|643
7SYN|1|2|G|644

Current chains

Chain 2

18S rRNA

Nearby chains

Chain K

uS4

Chain Y

uS12

Chain f

eS30