J5_7SYO_002

3D structure

PDB id

7SYO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES bound to the 40S ribosomal subunit, head open. Structure 9(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

CUUGU*AAAUAACAAUAC*GUAAUUGGAAUGAG*CGAGGAUCCAUUGGAGGGCAAGUC*GCUCCAAUAG

Length

65 nucleotides

Bulged bases

7SYO|1|2|A|555, 7SYO|1|2|A|599, 7SYO|1|2|U|607

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7SYO|1|2|C|30
7SYO|1|2|U|31
7SYO|1|2|U|32
7SYO|1|2|G|33
7SYO|1|2|U|34
*
7SYO|1|2|A|521
7SYO|1|2|A|522
7SYO|1|2|A|523
7SYO|1|2|U|524
7SYO|1|2|A|525
7SYO|1|2|A|526
7SYO|1|2|C|527
7SYO|1|2|A|528
7SYO|1|2|A|529
7SYO|1|2|U|530
7SYO|1|2|A|531
7SYO|1|2|C|532
*
7SYO|1|2|G|552
7SYO|1|2|U|553
7SYO|1|2|A|554
7SYO|1|2|A|555
7SYO|1|2|U|556
7SYO|1|2|U|557
7SYO|1|2|G|558
7SYO|1|2|G|559
7SYO|1|2|A|560
7SYO|1|2|A|561
7SYO|1|2|U|562
7SYO|1|2|G|563
7SYO|1|2|A|564
7SYO|1|2|G|565
*
7SYO|1|2|C|585
7SYO|1|2|G|586
7SYO|1|2|A|587
7SYO|1|2|G|588
7SYO|1|2|G|589
7SYO|1|2|A|590
7SYO|1|2|U|591
7SYO|1|2|C|592
7SYO|1|2|C|593
7SYO|1|2|A|594
7SYO|1|2|U|595
7SYO|1|2|U|596
7SYO|1|2|G|597
7SYO|1|2|G|598
7SYO|1|2|A|599
7SYO|1|2|G|600
7SYO|1|2|G|601
7SYO|1|2|G|602
7SYO|1|2|C|603
7SYO|1|2|A|604
7SYO|1|2|A|605
7SYO|1|2|G|606
7SYO|1|2|U|607
7SYO|1|2|C|608
*
7SYO|1|2|G|635
7SYO|1|2|C|636
7SYO|1|2|U|637
7SYO|1|2|C|638
7SYO|1|2|C|639
7SYO|1|2|A|640
7SYO|1|2|A|641
7SYO|1|2|U|642
7SYO|1|2|A|643
7SYO|1|2|G|644

Current chains

Chain 2

18S rRNA

Nearby chains

Chain D

40S ribosomal protein S2

Chain K

uS4

Chain Y

uS12

Chain f

eS30