J5_7SYO_005

3D structure

PDB id

7SYO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES bound to the 40S ribosomal subunit, head open. Structure 9(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

CAUGUCUAAG*CUGCGAAUGGC*GAGG*CACAU*AAGGCAG

Length

37 nucleotides

Bulged bases

7SYO|1|2|U|59, 7SYO|1|2|A|92, 7SYO|1|2|C|472

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7SYO|1|2|C|53
7SYO|1|2|A|54
7SYO|1|2|U|55
7SYO|1|2|G|56
7SYO|1|2|U|57
7SYO|1|2|C|58
7SYO|1|2|U|59
7SYO|1|2|A|60
7SYO|1|2|A|61
7SYO|1|2|G|62
*
7SYO|1|2|C|86
7SYO|1|2|U|87
7SYO|1|2|G|88
7SYO|1|2|C|89
7SYO|1|2|G|90
7SYO|1|2|A|91
7SYO|1|2|A|92
7SYO|1|2|U|93
7SYO|1|2|G|94
7SYO|1|2|G|95
7SYO|1|2|C|96
*
7SYO|1|2|G|434
7SYO|1|2|A|435
7SYO|1|2|G|436
7SYO|1|2|G|437
*
7SYO|1|2|C|457
7SYO|1|2|A|458
7SYO|1|2|C|459
7SYO|1|2|A|460
7SYO|1|2|U|461
*
7SYO|1|2|A|468
7SYO|1|2|A|469
7SYO|1|2|G|470
7SYO|1|2|G|471
7SYO|1|2|C|472
7SYO|1|2|A|473
7SYO|1|2|G|474

Current chains

Chain 2

18S rRNA

Nearby chains

Chain F

eS4 (S4 X isoform)

Chain H

eS6

Chain J

eS8

Chain K

uS4

Chain Z

eS24