J5_7SYO_006

3D structure

PDB id

7SYO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES bound to the 40S ribosomal subunit, head open. Structure 9(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

GUCGCUC*GGG*UGCAUU*ACCUCGGGCCG*CGACC

Length

32 nucleotides

Bulged bases

7SYO|1|2|G|126, 7SYO|1|2|C|127, 7SYO|1|2|U|305, 7SYO|1|2|C|306, 7SYO|1|2|G|307, 7SYO|1|2|G|308

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7SYO|1|2|G|123
7SYO|1|2|U|124
7SYO|1|2|C|125
7SYO|1|2|G|126
7SYO|1|2|C|127
7SYO|1|2|U|128
7SYO|1|2|C|129
*
7SYO|1|2|G|183
7SYO|1|2|G|184
7SYO|1|2|G|185
*
7SYO|1|2|U|214
7SYO|1|2|G|215
7SYO|1|2|C|216
7SYO|1|2|A|217
7SYO|1|2|U|218
7SYO|1|2|U|219
*
7SYO|1|2|A|302
7SYO|1|2|C|303
7SYO|1|2|C|304
7SYO|1|2|U|305
7SYO|1|2|C|306
7SYO|1|2|G|307
7SYO|1|2|G|308
7SYO|1|2|G|309
7SYO|1|2|C|310
7SYO|1|2|C|311
7SYO|1|2|G|312
*
7SYO|1|2|C|337
7SYO|1|2|G|338
7SYO|1|2|A|339
7SYO|1|2|C|340
7SYO|1|2|C|341

Current chains

Chain 2

18S rRNA

Nearby chains

Chain F

eS4 (S4 X isoform)

Chain H

eS6

Chain J

eS8