J5_7SYP_002

3D structure

PDB id

7SYP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the wt IRES and 40S ribosome binary complex, open conformation. Structure 10(wt)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CUUGU*AAAUAACA*UGGAAUGAG*CGAGGAUCCAUU*AAUAG

Length

39 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7SYP|1|2|C|30
7SYP|1|2|U|31
7SYP|1|2|U|32
7SYP|1|2|G|33
7SYP|1|2|U|34
*
7SYP|1|2|A|521
7SYP|1|2|A|522
7SYP|1|2|A|523
7SYP|1|2|U|524
7SYP|1|2|A|525
7SYP|1|2|A|526
7SYP|1|2|C|527
7SYP|1|2|A|528
*
7SYP|1|2|U|557
7SYP|1|2|G|558
7SYP|1|2|G|559
7SYP|1|2|A|560
7SYP|1|2|A|561
7SYP|1|2|U|562
7SYP|1|2|G|563
7SYP|1|2|A|564
7SYP|1|2|G|565
*
7SYP|1|2|C|585
7SYP|1|2|G|586
7SYP|1|2|A|587
7SYP|1|2|G|588
7SYP|1|2|G|589
7SYP|1|2|A|590
7SYP|1|2|U|591
7SYP|1|2|C|592
7SYP|1|2|C|593
7SYP|1|2|A|594
7SYP|1|2|U|595
7SYP|1|2|U|596
*
7SYP|1|2|A|640
7SYP|1|2|A|641
7SYP|1|2|U|642
7SYP|1|2|A|643
7SYP|1|2|G|644

Current chains

Chain 2

18S rRNA

Nearby chains

Chain K

uS4

Chain Y

uS12

Chain f

eS30