J5_7SYP_003

3D structure

PDB id

7SYP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the wt IRES and 40S ribosome binary complex, open conformation. Structure 10(wt)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CAUGUCUAAG*CUGCGAAUGGCU*AGAG*CAC*GGCAG

Length

34 nucleotides

Bulged bases

7SYP|1|2|A|92, 7SYP|1|2|C|472

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7SYP|1|2|C|53
7SYP|1|2|A|54
7SYP|1|2|U|55
7SYP|1|2|G|56
7SYP|1|2|U|57
7SYP|1|2|C|58
7SYP|1|2|U|59
7SYP|1|2|A|60
7SYP|1|2|A|61
7SYP|1|2|G|62
*
7SYP|1|2|C|86
7SYP|1|2|U|87
7SYP|1|2|G|88
7SYP|1|2|C|89
7SYP|1|2|G|90
7SYP|1|2|A|91
7SYP|1|2|A|92
7SYP|1|2|U|93
7SYP|1|2|G|94
7SYP|1|2|G|95
7SYP|1|2|C|96
7SYP|1|2|U|97
*
7SYP|1|2|A|433
7SYP|1|2|G|434
7SYP|1|2|A|435
7SYP|1|2|G|436
*
7SYP|1|2|C|457
7SYP|1|2|A|458
7SYP|1|2|C|459
*
7SYP|1|2|G|470
7SYP|1|2|G|471
7SYP|1|2|C|472
7SYP|1|2|A|473
7SYP|1|2|G|474

Current chains

Chain 2

18S rRNA

Nearby chains

Chain F

eS4 (S4 X isoform)

Chain H

eS6

Chain J

eS8

Chain K

uS4

Chain Z

eS24