J5_7SYQ_003

3D structure

PDB id

7SYQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the wt IRES and 40S ribosome ternary complex, open conformation. Structure 11(wt)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CAUGUCUAAG*CUGCGAAUGGC*GAG*CAC*GGCAG

Length

32 nucleotides

Bulged bases

7SYQ|1|2|A|92, 7SYQ|1|2|C|472

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7SYQ|1|2|C|53
7SYQ|1|2|A|54
7SYQ|1|2|U|55
7SYQ|1|2|G|56
7SYQ|1|2|U|57
7SYQ|1|2|C|58
7SYQ|1|2|U|59
7SYQ|1|2|A|60
7SYQ|1|2|A|61
7SYQ|1|2|G|62
*
7SYQ|1|2|C|86
7SYQ|1|2|U|87
7SYQ|1|2|G|88
7SYQ|1|2|C|89
7SYQ|1|2|G|90
7SYQ|1|2|A|91
7SYQ|1|2|A|92
7SYQ|1|2|U|93
7SYQ|1|2|G|94
7SYQ|1|2|G|95
7SYQ|1|2|C|96
*
7SYQ|1|2|G|434
7SYQ|1|2|A|435
7SYQ|1|2|G|436
*
7SYQ|1|2|C|457
7SYQ|1|2|A|458
7SYQ|1|2|C|459
*
7SYQ|1|2|G|470
7SYQ|1|2|G|471
7SYQ|1|2|C|472
7SYQ|1|2|A|473
7SYQ|1|2|G|474

Current chains

Chain 2

18S rRNA

Nearby chains

Chain F

eS4 (S4 X isoform)

Chain H

eS6

Chain J

eS8

Chain K

uS4

Chain Z

eS24