J5_7SYU_004

3D structure

PDB id

7SYU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the delta dII IRES w/o eIF2 48S initiation complex, closed conformation. Structure 13(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

GUCGCUC*GGG*UGCAUU*ACCUCGGGCCG*CGACC

Length

32 nucleotides

Bulged bases

7SYU|1|2|G|126, 7SYU|1|2|C|127, 7SYU|1|2|U|305, 7SYU|1|2|G|307

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7SYU|1|2|G|123
7SYU|1|2|U|124
7SYU|1|2|C|125
7SYU|1|2|G|126
7SYU|1|2|C|127
7SYU|1|2|U|128
7SYU|1|2|C|129
*
7SYU|1|2|G|183
7SYU|1|2|G|184
7SYU|1|2|G|185
*
7SYU|1|2|U|214
7SYU|1|2|G|215
7SYU|1|2|C|216
7SYU|1|2|A|217
7SYU|1|2|U|218
7SYU|1|2|U|219
*
7SYU|1|2|A|302
7SYU|1|2|C|303
7SYU|1|2|C|304
7SYU|1|2|U|305
7SYU|1|2|C|306
7SYU|1|2|G|307
7SYU|1|2|G|308
7SYU|1|2|G|309
7SYU|1|2|C|310
7SYU|1|2|C|311
7SYU|1|2|G|312
*
7SYU|1|2|C|337
7SYU|1|2|G|338
7SYU|1|2|A|339
7SYU|1|2|C|340
7SYU|1|2|C|341

Current chains

Chain 2

18S rRNA

Nearby chains

Chain F

40S ribosomal protein S4

Chain H

eS6

Chain J

eS8