J5_7SYW_002

3D structure

PDB id

7SYW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the wt IRES eIF5B-containing 48S initiation complex, closed conformation. Structure 15(wt)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CUUGU*AAAUAACA*UGGAAUGAGUCCA*UUAACGAGGAUCCAU*AUAG

Length

45 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7SYW|1|2|C|30
7SYW|1|2|U|31
7SYW|1|2|U|32
7SYW|1|2|G|33
7SYW|1|2|U|34
*
7SYW|1|2|A|521
7SYW|1|2|A|522
7SYW|1|2|A|523
7SYW|1|2|U|524
7SYW|1|2|A|525
7SYW|1|2|A|526
7SYW|1|2|C|527
7SYW|1|2|A|528
*
7SYW|1|2|U|557
7SYW|1|2|G|558
7SYW|1|2|G|559
7SYW|1|2|A|560
7SYW|1|2|A|561
7SYW|1|2|U|562
7SYW|1|2|G|563
7SYW|1|2|A|564
7SYW|1|2|G|565
7SYW|1|2|U|566
7SYW|1|2|C|567
7SYW|1|2|C|568
7SYW|1|2|A|569
*
7SYW|1|2|U|581
7SYW|1|2|U|582
7SYW|1|2|A|583
7SYW|1|2|A|584
7SYW|1|2|C|585
7SYW|1|2|G|586
7SYW|1|2|A|587
7SYW|1|2|G|588
7SYW|1|2|G|589
7SYW|1|2|A|590
7SYW|1|2|U|591
7SYW|1|2|C|592
7SYW|1|2|C|593
7SYW|1|2|A|594
7SYW|1|2|U|595
*
7SYW|1|2|A|641
7SYW|1|2|U|642
7SYW|1|2|A|643
7SYW|1|2|G|644

Current chains

Chain 2

18S rRNA

Nearby chains

Chain K

uS4

Chain Y

uS12

Chain Z

40S ribosomal protein S24

Chain f

eS30

Chain x

Eukaryotic translation initiation factor 5B