J5_7SYW_003
3D structure
- PDB id
- 7SYW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the wt IRES eIF5B-containing 48S initiation complex, closed conformation. Structure 15(wt)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- CAUG*CGAAUGGC*GAG*CACAU*AAGGCAG
- Length
- 27 nucleotides
- Bulged bases
- 7SYW|1|2|A|92, 7SYW|1|2|C|472
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7SYW|1|2|C|53
7SYW|1|2|A|54
7SYW|1|2|U|55
7SYW|1|2|G|56
*
7SYW|1|2|C|89
7SYW|1|2|G|90
7SYW|1|2|A|91
7SYW|1|2|A|92
7SYW|1|2|U|93
7SYW|1|2|G|94
7SYW|1|2|G|95
7SYW|1|2|C|96
*
7SYW|1|2|G|434
7SYW|1|2|A|435
7SYW|1|2|G|436
*
7SYW|1|2|C|457
7SYW|1|2|A|458
7SYW|1|2|C|459
7SYW|1|2|A|460
7SYW|1|2|U|461
*
7SYW|1|2|A|468
7SYW|1|2|A|469
7SYW|1|2|G|470
7SYW|1|2|G|471
7SYW|1|2|C|472
7SYW|1|2|A|473
7SYW|1|2|G|474
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain F
- 40S ribosomal protein S4
- Chain H
- eS6
- Chain J
- eS8
- Chain K
- uS4
- Chain Z
- 40S ribosomal protein S24
- Chain x
- Eukaryotic translation initiation factor 5B
Coloring options: